This is a list of all the Star Trek moments
1.06 - 1.08 - 1.13 - 2.08 - 3.17 - 4.01 - 4.04 - 4.12 - 4.14 - 5.12 - 6.03 - 6.17 - 6.18 -

1.06 - Rory's Birthday Parties (6)
transcript - episode description

SOOKIE: Too bad you couldn't get your mom to
relinquish Friday night.

LORELAI: No, she has her VULCAN death grip on that

SOOKIE: Not that surprising though.

Lorelai to Sookie about Rory's 16th birthday party.

1.08 - Love and War and Snow (8)
transcript - episode description

RORY: So, is Sookie in the kitchen?

LORELAI: And there she'll stay. [walks away]

RORY: Okay, so where were we?

LANE: I just met my soul mate.

RORY: Right, Rich Bloomingfeld. Does he still wear the Star Trek shirt?

Rory asks if a boy that Lane has a crush on still wears a Start Trek shirt.

1.13 - Concert Interruptus (13)
transcript - episode description

SOOKIE: Yeah, I’m good. Hold on. Up, please.

RORY: Jeez this stuff is like tribbles.

LORELAI: Oh, thank God - just in time. Grab a bag and move it to the side of the room and be very careful, this pile just tried to eat Sookie.

Tribbles were used on Start Trek.

2.08 - The Ins and Outs of Inns (29)
transcript - episode description

MIA: No, it was from that TV show. That famous one.

LUKE: It's not important.

MIA: Star Trek, that's it!

[Lorelai and Rory laugh]

LORELAI: Oh my God, oh my God!

LUKE: Stop it.

RORY: You were a Trekkie?

LUKE: I was not a Trekkie.

LORELAI: Uh uh, I do believe that denying you were a Trekkie is a violation of the prime directive.

RORY: Indubitably captain.

LUKE: It was a gift from my aunt, I wore it to make her happy.

LORELAI: I've never wanted to make any aunt of mine that happy.

MIA: Did I say something I shouldn't have?

LORELAI: Oh no Mia, that's okay. I just have to cancel everything I have scheduled for the next three months 'cause I'll still be laughing my ass off.

Luke had a Star Trek shirt as a kid which he wore all the time for a year.

Rory and Lorelai makes a joke at Luke's expence.

BOOTSY: This goes way beyond the Jess matter Taylor. Luke's been on my case since the first grade when he wrongfully accused me of sabotaging a clay imprint that he made of his hand.

LORELAI: Ooh! Think hard, was he dressed like Sulu?

LUKE: No one cares about the stupid clay hand Bootsy. And you stomped on it while it was drying. Three kids saw you.

Later Lorelai makes fun of Luke on the way to the town meeting.

Lorelai asks if he was dressed like Sulu.

3.17 - A Tale of Poes and Fire (60)
transcript - episode description

LORELAI: Good. Well, welcome to the Independence Inn. There will be a complimentary cask of amontillado on the table in your room, and if you're expecting your friends Doctor Tarr and Professor Fether, I'll send up another one. [pause] You said you were with the Poe Society.

FRED: Yeah, but it's just a hobby. We're not Trekkies.

LORELAI: No, no, I didn't mean to imply. . .I mean, you're not freaks, no way. Here, room six.

Lorelai is checking in the Poes at the Inn and telling a "Joke" othey say they are not "Trekkies"

4.01 - Ballroom & Biscotti (66)
transcript - episode description

RORY: No, no. I'll just. . .I'll walk really fast. Maybe Taylor won't notice me.

LORELAI: Yeah. You better walk really fast, like warp speed Mr. Sulu kind of fast.

RORY: Let's go.

Lorelai tells Rory she needs to go at "warp speed Mr. Sulu" to get past Taylor before he sees her.

4.04 - Chicken or Beef (69)
transcript - episode description

RORY: Did you at least call the stupid security company again?

LORELAI: Yes, Meg sends her love. Don't worry - I'll stop by on my way to the inn. And what are your plans today, Persis Khambata?

RORY: Well, today, I'm going to do nothing but hang out in town, read, veg, drink coffee, and have the perfect Stars Hollow day.

In reference to Rory having trimmed her hair. Persis Khambatta shaved her head for Star Trek: The Motion Picture.

4.11 - In the Clamor and the Clangor (76)
transcript - episode description

KIRK: Actually, that's not true. The other day I stood too close to the bells and they rang so loud that there's now a persistent ringing in my ears. Now I can't tell which are the church bells and which are the Kirk bells.

LORELAI: [Mock concern] Oh, no. Did you go to the doctor?

KIRK: Yes, he said I have tinnitis. I looked it up on the web at "Celebrities Who Share Your Disease" and found that William Shatner is likewise afflicted.

LORELAI: Really, Kirk and Captain Kirk?

KIRK: The irony wasn't lost on me.

Kirk telling Lorelai about his tinnitis.

4.12 - A Family Matter (77)
transcript - episode description

JASON: But, it's inevitable. They're gonna see us together someplace, or a traffic report will take pictures of cars on the expressway and we'll be sitting in the car - and then Richard will be watching the news and he will see us, so barring some sort of Star Trek-like cloaking device - which was problematic in every incarnation of Star Trek - I remember Kirk complaining about it, I remember Picard complaining about it - they will see us, and we'll get caught.

LORELAI: I'm very uncomfortable dating a Trekkie.

Jason (Digger) makes referance to the cloaking device

While taking about hiding the relationship with Lorelai from their parents. Lorelai is uncomfortable with the fact she is dating a trekkie.

4.14 - The Incredible Shrinking Lorelais (79)
transcript - episode description

RICHARD: Well, I didn't see you.

LORELAI: Well, I had my cloaking device activated, so --

When Richard doesn't see Lorelai sitting on the coach she says it's because she had her cloaking device on.

Then tells Jason cloaking device "never leave home without it".

5.12 - Come Home (99)
transcript - episode description

LUKE: Hey, twice a week you’re going to bed at 9:30 like a 72-year-old woman because I have early deliveries, so I figured the least I could do is make sure you don’t miss your Charlie Rose or your Patrick Stewart

LORELAI: Jon Stewart.

Luke mentions Patrick Stewart when he means Jon Stewart while talking about late night TV shows.

6.03 - The UnGraduate (112)
transcript - episode description

LORELAI: I will get my own stuff, thank you. (starts walking to the house, but backtracks) Wooo, now I just have to figure out what to do with Paul Anka. You know, I've never left him alone so late before, and he might start doing that howling thing the neighbours are so fond of. But....well, that's okay. So...Oh! You know, I guess I could just leave him here and I can come back and get him after work, which will be, oh! two, three, four in the morning. Boy. Late. (looks for a reaction from Luke. He seems to not be getting the hint) Or I could drop him off at a kennel for a few hours. I know there's a good one in Woodbridge, 20 miles away. Of course, I'd have to leave now and pick up some dilithium-crystals on the way to fix the warp drive in my jeep so that I could drive there and back in time to meet the wedding party back at the Inn, but that's doable. (looking at Luke for yet another reaction. He still looks unmoved) Yeah...and then, of course, by the time I get off work and drive all the way back ther

LUKE: (amused) I just wanted to see how long you'd go on.

LORELAI: Well, you know my babbling capabilities are infinite.

LUKE: I'll take the dog home with me. And points for the dilithium-crystal reference.

LORELAI: Well, when you sleep with geeks...(TJ approaches them with a bunch of paper lunch bags)

Lorelai mentions dilithium crystal when she is talking about what to do with Paul Anka for the night.

6.17 - I'm OK, You're OK (126)
transcript - episode description
KIRK: That's Kirk's other thing, the young, virile eye candy angle for lonely widows and aging divorcées. Works like a charm. I plan on running it by Lulu, of course.

LORELAI: Kirk, get out of here. Take your jacket and your dippy "Star Trek" device and your creepy new career and scram.

KIRK: Fine, but I would have expected a little more cooperation from you, considering what I'm doing for your parents.
Lorelai talking about Kirks Bluetooth wireless cell phone thing,

6.18 - The Real Paul Anka (127)
transcript - episode description
APRIL: And those are your fellow Grups.

LUKE: The what?

APRIL: Grown-ups. You never saw the original "star trek"?

LUKE: Oh, yes, Grups. Yes, I did.
Between Luke and April about the first Star Trek.

7.01 - The Long Morrow (132)
transcript - episode description
RORY: Ugh. What about space?

LORELAI: It's the final frontier?
Roay and Lorelai taking about the Rocket
email me if you have any corrections or additions to the list